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  • Kane, SR, Chakicherla, AY, Chain, PSG, Schmidt, R, Shin, MW, Legler, TC, Scow, KM, Larimer, FW, Lucas, SM, Richardson, PM, and Hristova, KR. (2007). Whole-Genome Analysis of the Methyl tert-Butyl Ether-Degrading Beta-Proteobacterium Methylibium petroleiphilum PM1. J. Bacteriol. 189(5): 1931-1945. PubMed
  • Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA, Boller AJ, Chain PS, Clark JA, Davis CR, Detter C, Do KF, Dobrinski KP, Faza BI, Fitzpatrick KA, Freyermuth SK, Harmer TL, Hauser LJ, Hugler M, Kerfeld CA, Klotz MG, Kong WW, Land M, Lapidus A, Larimer FW, Longo DL, Lucas S, Malfatti SA, Massey SE, Martin DD, McCuddin Z, Meyer F, Moore JL, Ocampo LH, Paul JH, Paulsen IT, Reep DK, Ren Q, Ross RL, Sato PY, Thomas P, Tinkham LE, Zeruth GT. (2006). The Genome of Deep-Sea Vent Chemolithoautotroph Thiomicrospira crunogena XCL-2. PLoS Biol. 4(12): e383. PubMed
  • Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agullo L, Reyes VL, Hauser L, Cordova M, Gomez L, Gonzalez M, Land M, Lao V, Larimer F, Lipuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson P, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM. (2006) Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc Natl Acad Sci USA 103(42):15280-15287. PubMed
  • Tuskan, et al., (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313(5793): 1596-604. PubMed
  • Klotz MG, Arp DJ, Chain PS, El-Sheikh AF, Hauser LJ, Hommes NG, Larimer FW, Malfatti SA, Norton JM, Poret-Peterson AT, Vergez LM, Ward BB. (2006) Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707. Appl Environ Microbiol. 72(9): 6299-315. PubMed
  • Chain PS, Hu P, Malfatti SA, Radnedge L, Larimer F, Vergez LM, Worsham P, Chu MC, Andersen GL (2006). Complete Genome Sequence of Yersinia pestis Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen. J. Bacteriol.. 188(12): 4453-4463. PubMed
  • Mavromatis K, Doyle CK, Lykidis A, Ivanova N, Francino MP, Chain P, Shin M, Malfatti S, Larimer F, Copeland A, Detter JC, Land M, Richardson PM, Yu XJ, Walker DH, McBride JW, Kyrpides NC (2006). The genome of the obligately intracellular bacterium Ehrlichia canisi reveals themes of complex membrane structure and immune evasion strategies. J. Bacteriol.. 188(11):4015-4023. PubMed
  • Beller, HR, PS Chain, TE Letain, A Chakicherla, FW Larimer, PM Richardson, MA Coleman, AP Wood, and DP Kelly (2006). The genome sequence of the obligately chemolithoautotrophic facultatively anaerobic bacterium Thiobacillus denitrificans. J. Bacteriol.. 188(4): 1473-1488. PubMed
  • Starkenburg SR, Chain PSG, Sayavedra-Soto LA, Hauser L, Land ML, Larimer FW, Malfatti SA, Klotz MG, Bottomley PJ, Arp DJ, Hickey WJ. (2006) Genome sequence of the cheolithoautotrophic nirtite-oxidizing bacterium Nitrobacter winogradskyi Nb-255. Appl Environ Microbiol 7(3):2050-2063. PubMed
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