CGCI Data Matrix

Last Updated: March 28, 2016
Disease Patient Data Gene Expression Copy Number miRNA Sequence Other
Burkitt's Lymphoma (BLGSP) - Ongoing
Burkitt's Lymphoma (BLGSP)
Clinical File
Sample Matrix
mRNA-seq
Whole Genome
Whole Genome
mRNA-seq
Targeted Resequencing
HIV+ Tumor Molecular Characterization Project (HTMCP) - Ongoing
HIV+ Diffuse Large B-Cell Lymphoma (HTMCP-DLBCL)
Clinical File
Sample Matrix
mRNA-seq
FASTQ/BAM†
Whole Genome
FASTQ/BAM†
miRNA-seq
FASTQ/BAM†
Whole Genome
FASTQ/BAM†
mRNA-seq
FASTQ/BAM†
Targeted Resequencing
HIV+ Cervical Cancers (HTMCP-CC)
Clinical File
Sample Matrix
mRNA-seq
Whole Genome
miRNA-seq
Whole Genome
mRNA-seq
Targeted Resequencing
HIV+ Lung Cancers (HTMCP-LC)
Clinical File
Sample Matrix
mRNA-seq
FASTQ/BAM†
Whole Genome
FASTQ/BAM†
miRNA-seq
FASTQ/BAM†
Whole Genome
FASTQ/BAM†
mRNA-seq
FASTQ/BAM†
Targeted Resequencing
Medulloblastoma (MB) - Completed
Medulloblastoma (MB)
Clinical File
Sample Matrix
Illumina Infinium II 1M-Duo
DCC Controlled†
Targeted Resequencing
Sequence Trace Linking Table†
NCBI Trace Archive*
Non-Hodgkin's Lymphoma (NHL) - Completed
Diffuse Large B-Cell Lymphoma (NHL-DLBCL)
Clinical File
Sample Matrix
mRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†
Follicular Lymphoma (NHL-FL)
Clinical File
Sample Matrix
mRNA-seq
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
Whole Genome
FASTQ/BAM†
DCC Open*
DCC Controlled†
mRNA-seq
FASTQ/BAM†
DCC Open*
DCC Controlled†
Whole Exome
FASTQ/BAM†
DCC Open*
DCC Controlled†