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JGI sequenced data

Non-public resource

  • Restricted to view icon - Non-public resource. Access can be restricted. For access information please email to Principal investigator

Group

  • Group Genomes icon - Proposal/Group of Projects
  • Group Fungi Genomes icon - Group of Fungal Genomes
Name
Resources
JGI Info
Product
Status
Principal Investigator
Taxonomy
Other
Superseded by:
JGI Project Id:
JGI Proposal Id:
JGI Proposal Id:
Directory Number:
Release Date:
Related Projects:
Related Projects:
Principal Investigator:
Sample Contact:
Taxonomy:
NCBI Project Id:
Ecosystem:
Genbank
Genus:
Species:
Strain:
TaxonomyID for Sequencing Projects:
    • Sample site:
    Habitat:
    Img submission id:
    Group:

    New on the portal:

    KBase is a platform enabling systems biology research and comparative functional genomics of microbes and plants while promoting the sharing of results and methods with other scientists.
    Microbial genome reads and assemblies can be transferred directly from the JGI Genome Portal to KBase for assembly, annotation, metabolic modeling, and more using the Push to KBase feature. Any data you transfer to KBase is private unless you choose to share it.

    Learn more about KBase.


    Genome Releases

    JGI provides a variety of ways to download different data
    • Download with web UI
    • Download with Globus service
    • Download with API

    Learn More about Download Options

    New to Genome Portal? Explore what you can do here. Expand your knowlege about features and data with Help pages
    Tree of Life Alphaproteobacteria Betaproteobacteria Gammaproteobacteria Deltaproteobacteria Epsilonproteobacteria Chlamydiae/Verrucomicrobia Dictyoglomi Planctomycetes Fusobacteria Synergistetes Deferribacteres Spirochaetes Deinococcus-Thermus Thermotogae Chloroflexi Aquificae Cyanobacteria Actinobacteria Acidobacteria Firmicutes Bacteroidetes Chlorobi Fibrobacteres Thermodesulfobacteria Korarchaeota Crenarchaeota Euryarchaeota Cryptophyta Haptophyta Rhizaria Heterokonta Heterolobosea Viridiplantae Choanozoa Metazoa Fungi Amoebozoa Engineered metagenomes Host-Associated metagenomes Soil metagenomes Thermal Springs metagenomes Marine metagenomes Freshwater metagenomes
    "Tree of Life" drawing by Leila Hornick, copyright 2005
    TREE OF LIFE: To use the tree navigation: click a branch name and select the name of the organism of your interest.
    icon representing GOLDGenomes OnLine Database (GOLD) - a resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world.
    icon representing IMGIntegrated Microbial Genomes (IMG) and Metagenomes (IMG/M) - resources for comparative analysis and annotation of all publicly available genomes.
    icon representing Mycocosm Mycocosm - the Fungal Genomics Resource. Provides access to the annotated fungal genomes and tools for their analysis.
    icon representing PhytozomePhytozome - a comparative hub for green plant genomes and gene family data and analysis.
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    Visit JGI Data Management & Analysis Systems for comparative analysis and annotation of all publicly available genomes.

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    Quickly navigate to the individual Genome Portal, JGI Project or Group. (picture showing the action of opening the drop-down by clicking on the node of the tree)