RegTransBase consists of two modules - a database of regulatory interactions based on literature and an expertly curated database of transcription factor binding sites. Our literature based information in RegTransBase is a manually curated database of regulatory interactions in prokaryotes more
RegTransBase captures the knowledge in published scientific literature using a controlled vocabulary. RegTransBase describes a large number of regulatory interactions reported in many organisms and contains various types of experimental data, in particular:
Our analysis section of RegtransBase is based on a set of manually curated alignments of transcription factor binding sites and allows you to search for new binding sites and verify conservation of bindings sites across multiple species through the use of web based analysis tools. |
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Classification of Experiments:
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Browse by ExperimentsGenomeRelevance Phenotypes ExperimentTechnique MiscellaneousEffector |
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Cite RegTransBase::
Michael J Cipriano, Pavel N Novichkov, Alexey E Kazakov, Dmitry A Rodionov, Adam P Arkin, Mikhail S Gelfand and Inna Dubchak. RegTransBase database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. BMC Genomics 2013, 14:213. Kazakov AE, Cipriano MJ, Novichkov PS, Minovitsky S, Vinogradov DV, Arkin A, Mironov AA, Gelfand MS, Dubchak I. RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res. 2007 Jan;35(Database issue):D407-12.
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