Welcome to precisionFDA
A community platform for NGS assay evaluation and regulatory science exploration.
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Write and publish rich notes describing your thoughts and your work
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Attach any files, comparisons, or apps
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Read what others are reporting and reproduce their workflows
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Upload your own files on cloud storage
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Generate files through running apps
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Publish reference data or any other files
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Browse other members' contributions
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Quantify the similarity between two sets of genomic variants (VCF files)
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Compare your own test set (for a given biospecimen) to established benchmark sets
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Run mapping and variation calling pipelines or other Linux-based software apps on the cloud
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Contribute your own software and scripts and let others explore them
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precisionFDA Challenges
App-a-thon in a Box
- 28 responses
- 79 followers
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Challenge started31 Aug 2016 12:00 UTC
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Submissions closed31 Dec 2016 23:59 UTC
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Results announced04 Jan 2017 22:10 UTC
Truth Challenge
- 25 responses
- 58 followers
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Challenge started27 Apr 2016 03:59 UTC
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Submissions closed27 May 2016 03:59 UTC
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Results announced29 Jun 2016 13:30 UTC
Consistency Challenge
- 17 responses
- 54 followers
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Challenge started26 Feb 2016 03:59 UTC
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Submissions closed26 Apr 2016 03:59 UTC
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Results announced26 May 2016 00:50 UTC
Latest News and Announcements
The App-a-thon in a Box Challenge is now closed!
January 3rd, 2017
January 3rd, 2017
We would like to thank all the community members that participated in the PrecisionFDA App-a-thon in a Box Challenge!
Read the closing remarks for this challenge here.
Stay tuned for more challenges in 2017!
Stay tuned for more challenges in 2017!
Thank you for sharing your experience!
December 19th, 2016
PrecisionFDA would like to thank its community members that showcased their activities and innovation at the World Precision Medicine Congress on November 15, 2016 in Washington DC:
Gil Alterovitz (Harvard/MIT)
Brendan Gallagher (Sentieon)
Rachel Goldfeder (Stanford)
Deepak Grover (Sanofi)
Marghoob Mohiyuddin (Roche)
Jeffrey Staples (Regeneron)
Justin Zook (NIST)
Gil Alterovitz (Harvard/MIT)
Brendan Gallagher (Sentieon)
Rachel Goldfeder (Stanford)
Deepak Grover (Sanofi)
Marghoob Mohiyuddin (Roche)
Jeffrey Staples (Regeneron)
Justin Zook (NIST)
Now available: Press Kit with precisionFDA logos and community badges
Optimizing Regulatory Oversight for Next Generation Sequencing Test
July 6th, 2016
In support of the White House’s Precision Medicine Initiative, the FDA issued two draft guidances that offer a streamlined approach to the oversight of ‘Next Generation Sequencing’ tests that detect medically important differences in a person’s genomic makeup.
Interview with the former FDA Chief Health Informatics Officer about precisionFDA
precisionFDA demonstrates FDA's commitment to innovating the regulatory science needed to advance the growing era of precision medicine
Robert Califf
Community Participants
The comparison framework uses open-source software by 