Studies
|
60862 |
|
Biosamples
|
205715 |
|
Sequencing Projects
|
563346 |
|
Analysis Projects
|
418705 |
| Organisms | 513511 |
| ORGANISM INFORMATION | |
|---|---|
| GOLD Organism ID |
Go0327591 |
|
Organism Name
|
Populus trichocarpa BESC-402 |
| Other Names |
|
| Common Name |
|
| Domain |
EUKARYAL |
|
Genus
|
Populus |
| Genus Synonyms |
|
|
Species
|
Populus trichocarpa |
| Species Synonyms |
|
| Strain |
|
| Subspecies |
|
|
Phylogenetic Markers
|
|
|
Taxonomy Classification Method
|
|
| Serovar/Cultivar |
BESC-402 |
| Phylum |
PLANTS-STREPTOPHYTA |
| NCBI Taxonomy ID | 3694 Source is NCBI's Taxonomy |
| Type Strain |
|
| Culture Collection ID |
|
| Organism Type |
Natural |
| Cultured |
Yes |
| Culture Type |
Isolate |
| Comments |
|
| Biosafety Level |
|
|
Taxon DOI
|
|
|
Exemplar DOI
|
|
|
Exemplar Name
|
|
| Genbank 16S ID |
|
| Is Public |
Yes |
| Related Sequencing Projects |
1 |
| Related Analysis Projects |
|
| NCBI TAXONOMY | |
|---|---|
| NCBI Taxonomy Name |
Populus trichocarpa |
| NCBI Tax ID | 3694 Source is NCBI's Taxonomy |
| NCBI Superkingdom |
Eukaryota |
| NCBI Kingdom |
Viridiplantae |
| NCBI Phylum |
Streptophyta |
| NCBI Class |
Magnoliopsida |
| NCBI Order |
Malpighiales |
| NCBI Family |
Salicaceae |
| NCBI Genus |
Populus |
| NCBI Species |
Populus trichocarpa |
| ORGANISM METADATA | |
|---|---|
| Cell Diameter |
|
| Cell Shape |
|
| Color |
|
| Gram Stain |
|
| Motility |
|
| Oxygen Requirement (MIGS-22) |
|
| pH |
|
| Salinity (MIGS-6.3) |
|
| Pressure |
|
| Sporulation |
|
|
Carbon Source
|
|
| Growth Temperature |
|
| Cell Length |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
| Cell Arrangements |
|
| Diseases (MIGS-15) |
|
| Habitats (MIGS-6) |
|
| Metabolism |
|
| Phenotypes |
|
| Energy Sources |
|
| Biotic Relationships (MIGS-14) |
|
|
Propagation
|
|
| ORGANISM ISOLATION | |
|---|---|
| Sample Collection Date (MIGS-5) |
5/8/2015
|
|
Sample Isolation Publication
|
|
|
Sample Collection Site
(MIGS-13)
|
xylem |
| Isolation Country/Ocean |
USA |
| Sample Isolation Comments |
|
|
Collection Method
|
|
|
Contact Name
|
Sara Jawdy |
|
Contact Email
|
[email protected] |
|
ECOSYSTEM CLASSIFICATION
|
|
|---|---|
| Ecosystem |
Environmental |
| Ecosystem Category |
Terrestrial |
| Ecosystem Type |
Unclassified |
| Ecosystem Subtype |
Unclassified |
| Specific Ecosystem |
Unclassified |
| Ecosystem Path Id |
4198 |
| ENVIRONMENTAL INFORMATION | |
|
Geographic Location
(MIGS-4)
|
USA: Clatskanie, Oregon |
|
Latitude
(MIGS-4.1)
|
46.0993 |
|
Longitude
(MIGS-4.2)
|
-123.2086 |
|
LatLong Information
|
|
| Geographical Map | |
| Broad-scale Environmental Context (MIxS:0000012) | |
| Local-scale Environmental Context (MIxS:0000013) | |
| Environmental Medium (MIxS:0000014) | |
| Altitude (MIGS-4.4) |
17 Meters.
|
| Elevation |
|
| Depth (MIGS-4.3) |
|
| Subsurface Depth |
|
| Temperature Range |
|
| Sample Collection Temperature |
|
| Chlorophyll Concentration |
|
| Nitrate Concentration |
|
| Oxygen Concentration |
|
| Salinity Concentration |
|
| Methane Concentration (mmol) |
|
|
Sample Conductivity
|
|
| Growth Conditions |
|
| Bicarbonate Concentration (mM) |
|
| Soluble Iron Concentration (uM) |
|
| Hydrogen Sulfide Concentration (mM) |
|
| Hydrogen Sulfide Presence |
|
| Irradiance |
|
| ProPortal Ocean |
|
| ProPortal Isolation |
|
| ProPortal Station |
|
| ProPortal WOA Temperature |
|
| ProPortal WOA Salinty |
|
| ProPortal WOA Oxygen |
|
| ProPortal WOA Silicate |
|
| ProPortal WOA Phosphate |
|
| ProPortal WOA Nitrate |
|
