PROJECT INFORMATION | |
---|---|
GOLD Project ID |
Gp0175549
|
Project Name |
Blueberry fruit drop associated virus WA
|
Other Names |
|
Legacy GOLD ID |
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NCBI BioProject Name | Blueberry fruit drop associated virus |
NCBI BioProject Accession |
PRJNA303938 |
NCBI Locus Tag |
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NCBI BioSample Accession |
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Source Sample ID |
|
PI | Unknown |
Added By | JGI automated process on 2016-11-07 |
Last Modified By | JGI automated process on 2016-11-10 |
Project Comments |
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Project Status |
Permanent Draft
|
Project Relevance |
Evolution |
Sequencing Center |
Oregon State University
(USA)
|
Collaborating Institute |
|
Funding Agency |
|
Project Description |
Blueberry fruit drop associated virus genome sequencing
|
Is JGI Project |
No
|
Project Information Visibility | Public |
PROJECT TYPE | |
Specimen |
Organism |
Sequencing Strategy |
Whole Genome Sequencing
|
Nucleic Acid |
DNA |
EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status |
|
JGI Award DOI |
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Genome Publications |
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Other Publications |
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Ignored Publications |
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Unassigned Publications |
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Blueberry fruit drop associated virus RefSeq Genome |
Organism |
Blueberry fruit drop associated virus WA |
Analysis Projects |
Blueberry fruit drop associated virus WA |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
---|---|
Sequencing Status |
Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal |
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Contamination Screening Input |
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DNA Amplification Method |
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Single Cell Lysis Protocol |
|
Single Cell Lysis Approach |
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Sequencing Comments |
|
DNA Amplification Kit |
|
Sequencing Technology (MIGS-29) |
Sanger |
Library Method (MIGS-28) |
|
Library Layout |
|
Library Screening Method |
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Number Of Reads |
|
Read Size |
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Vector |
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0333359 |
Organism Name |
Blueberry fruit drop associated virus WA
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
VIRUS
|
Phylogeny |
VIRUS
|
Genus |
|
Genus Synonyms |
|
Species |
Blueberry fruit drop associated virus WA
|
Subspecies |
|
Species Synonyms |
|
Strain |
WA
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
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Type Strain |
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
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Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY | |
NCBI Taxonomy ID |
1751715 |
NCBI Superkingdom |
Viruses
|
NCBI Kingdom |
Pararnavirae
|
NCBI Phylum |
Artverviricota
|
NCBI Class |
Revtraviricetes
|
NCBI Order |
Ortervirales
|
NCBI Family |
Caulimoviridae
|
NCBI Genus |
Vaccinivirus
|
NCBI Species |
Blueberry fruit drop associated virus
|
Viral Group |
Retro-transcribing viruses
|
Viral Subgroup |
Caulimoviridae
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Plants
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
|
Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
|
pH |
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Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
|
Biotic Relationships |
|
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
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Cell Arrangements |
|
Diseases |
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Known Habitats |
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Metabolisms |
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Phenotypes |
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Energy Sources |
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