Ferré-D'Amaré Lab Publications
2015-2017
110. Stagno, J.R., Liu, Y., Bhandari, Y.R., Conrad, C.E., Panja, S., Swain, M., Fan, L., Nelson, G., Li, C., Wendel, D.R., White, T.A. Coe, J.D., Wiedom, M.O., Knoska, J., Oberthuer, D., Tuckey, R.A., Yu, P., Dyba, M., Tarasov, S.G., Weierstall, U., Grant, T.D. Schwieters, C.D., Zhang, J., Ferré-D'Amaré, A.R., Fromme, P., Draper, D.E. Liang. M., Hunter, M.S., Boutet, S., Tan, K., Zuo, X., Ji, X., Barty, A., Zatsepin, N.A., Chapman, H.N., Spence, J.C., Woodson, S.A. & Wang, Y.X. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography. Nature (published online Nov 16, 2016). [abstract]
109. Ferré-D'Amaré, A.R. RNA binding: getting specific about specificity. Cell Chem. Biol. 23, 1177-1178 (2016). [abstract]
108. Zhang, J., & Ferré-D'Amaré, A.R. Trying on tRNA for size: RNase P and the T-box riboswitch as molecular rulers. Biomolecules (2016). [abstract]
107. Lau, M.W. & Ferré-D'Amaré, A.R. In vitro evolution of coenzyme-independent variants from the glmS ribozyme structural scaffold. Methods (2016). [abstract]
106. Meyer P.A. et al. Data publication with the structural biology data grid supports live analysis. Nature Comm. 7, 10882 (2016). [abstract]
105. Zhang, J. & Ferré-D'Amaré, A.R. The tRNA elbow in structure, recognition and evolution. Life 6 (2016), doi: 10.3390/life6010003. [abstract]
104. Baird, N.J., Inglese, J., & Ferré-D'Amaré, A.R. Rapid RNA-ligand interaction analysis through high-information content conformational and stability landscapes. Nature Comm. 6, 8898 (2015). [abstract]
103. Jones, C.P. & Ferré-D'Amaré, A.R. Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains. Nature Struct. Mol. Biol. 22, 679-685 (2015). [abstract]
102. Ferré-D'Amaré, A.R. Use of the U1A protein to facilitate crystallization and structure determination of large RNAs. Methods Mol. Biol. 1320, 67-76 (2015). [abstract]
101. Zhang, J., & Ferré-D'Amaré, A.R. Post-crystallization improvement of RNA crystal diffraction quality. Methods Mol. Biol. 1316, 13-24 (2015). [abstract]
100. Zhang, J., & Ferré-D'Amaré, A.R. Structure and mechanism of the T-box riboswitches. Wiley Interdiscip. Rev. RNA 6, 419-433 (2015). [abstract]
99. Liu, Y., Holmstron, E., Zhang, J., Yu, Ping., Wang, J., Dyba, M.A., Chen, D., Ying, J., Lockett, S., Nesbitt, D.J., Ferré-D'Amaré, A.R., Sousa, R., Stagno, J.R., Wang, Y.X. Synthesis and applications of RNAs with position-selective labelling and mosaic composition. Nature 522, 368-372 (2015). [abstract]
98. Miao, Z., Adamiak, R.W., Blanchet, M.F., Boniecki, M., Bujnicki, J.M., Chen, S.J., Cheng, C., Chojnowski, G., Chou, F.C., Cordero, P., Cruz, J.A., Ferré-D'Amaré, A.R., Das, R., Ding, F., Dokholyan, N.V., Dunin-Horkawicz, S., Kladwang, W., Krokhotin, A., Lach, G., Magnus, M., Major, F., Mann, T.H., Masquida, B., Matelska, D., Meyer, M., Paselis, A., Popenda, M., Purzycka, K.J., Serganov, A., Stasiewicz, J., Szachniuk, M., Tandon, A., Tian, S., Wang, J., Xiao, Y., Xu, X., Zhang, J., Zhao, P., Zok, T., Westhof, E. RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures. RNA 21, 1066-1084 (2015). [abstract]
97. Ferré-D'Amaré, A.R. On the shoulders of giants. RNA 21, 504-505 (2015). [abstract]
96. Jones, C.P., & Ferré-D'Amaré, A.R. RNA quaternary structure and global symmetry. Trends Biochem. Sci. 40, 211-220 (2015). [abstract]
95. Chen, M.C., Murat, P., Abecassis, K., Ferré-D'Amaré, A.R. & Balasubramanian, S. Insights into the mechanism of a G-quadruplex-unwinding DEAH-box helicase. Nuclec Acids Res. 43, 2223-2231 (2015). [abstract]
2012-2014
94. Zhang, J., & Ferré-D'Amaré, A.R. A Flexible, Scalable Method for Preparation of Homogeneous Aminoacylated tRNAs. Meth. Enzymol. 549C, 105-113 (2014). [abstract]
93. Warner, K.D., & Ferré-D'Amaré, A.R. Crystallographic analysis of TPP riboswitch binding by small-molecule ligands discovered through fragment-based drug discovery approaches. Meth. Enzymol. 549C, 221-233 (2014). [abstract]
92. Jones, C.P., & Ferré-D'Amaré, A.R. Crystal structure of a c-di-AMP riboswitch reveals an internally pseudo-dimeric RNA. EMBO J. 33, 2692-2703 (2014). [abstract]
91. Zhang, J., & Ferré-D'Amaré, A.R. Dramatic improvement of crystals of large RNAs by cation replacement and dehydration. Structure 22, 1363-1371 (2014). [abstract]
90. Warner, K.D., Chen, M.C., Song, W., Strack, R.L., Thorn, A., Jaffrey, S.R., & Ferré-D'Amaré, A.R. Structural basis for activity of highly efficient RNA mimics of green fluorescent protein. Nature Struct. Mol. Biol. 21, 658-663 (2014). [abstract]
89. Zhang, J., & Ferré-D'Amaré, A.R. Direct evaluation of tRNA aminoacylation status by the T-box riboswitch using tRNA-mRNA stacking and steric readout. Mol. Cell. 55, 148-155 (2014). [abstract]
88. Zhang, J., Jones, C.P., & Ferré-D'Amaré, A.R. Global analysis of riboswitches by small-angle X-ray scattering and calorimetry. Biochim. Biophys. Acta 1839, 1020-1029 (2014). [abstract]
87. Warner, K.D., Homan, P., Weeks, K.M., Smith, A.G., Abell, C. & Ferré-D'Amaré, A.R. Validating fragment-based drug discovery for biological RNAs: lead fragments bind and remodel the TPP riboswitch specifically. Chem. Biol. 21, 591-595 (2014). [abstract]
86. Zhang, J., & Ferré-D'Amaré, A.R. New molecular engineering approaches for crystallographic studies of large RNAs. Curr. Op. Struct. Biol. 26, 9-15 (2014). [abstract]
85. Baird, N.J., & Ferré-D'Amaré, A.R. Analysis of riboswitch structure and ligand binding using small-angle X-ray scattering (SAXS). Meth. Mol. Biol. 1103, 211-225 (2014). [abstract]
84. Lau, M.W.L., & Ferré-D'Amaré, A.R. An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence. Nature Chem. Biol. 9, 805-810 (2013). [abstract]
83. Zhang, J., & Ferré-D'Amaré, A.R. Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA. Nature 500, 363-366 (2013). [abstract]
82. Posakony, J.J., & Ferré-D'Amaré, A.R. Glucosamine and glucosamine-6-phosphate derivatives: catalytic cofactor analogues for the glmS ribozyme. J. Org. Chem. 78, 4730-4743 (2013). [abstract]
81. Ferré-D'Amaré, A.R. Riboswitches. In: Lennarz, W.J. and Lane, M.D. (eds.) The Encyclopedia of Biological Chemistry, Vol. 4, pp. 136-141. Waltham, Academic Press (2013).
80. Ferré-D'Amaré, A.R. Crystallization of RNA for structure determination by X-ray crystallography. In Structure and Folding of RNA. Klostermeier D. & Hammann, C. (eds). Berlin, deGruyter pp. 319-333 (2013).
79. Baird, N.J., & Ferré-D'Amaré, A.R. Modulation of quaternary structure and enhancement of ligand binding by the K-turn of tandem glycine riboswitches. RNA 19, 167-176 (2013). [abstract]
78. Wood, S., Ferré-D'Amaré, A.R. & Rueda, D. Allosteric tertiary interactions pre-organize the c-di-GMP riboswitch and accelerate ligand binding. ACS Chem. Biol. 7, 920-927 (2012). [abstract]
77. Baird, N.J., Zhang, J., Hamma, T., & Ferré-D'Amaré, A.R. YbxF and YlxQ are bacterial homologs of L7Ae, and bind K-turns but not K-loops. RNA 18, 759-770 (2012).[abstract]
2009-2011
76. Gong, B., Klein, D.J., Ferré-D'Amaré, A.R., & Carey P.R. The glmS ribozyme tunes the catalytically critical pKa of its coenzyme glucosamine-6-phosphate. J. Am. Chem. Soc. 133, 14188-14191 (2011). [abstract]
75. Edwards, T.E., Cekan, P., Reginsson, G.W., Shelke, S.A., Ferré-D'Amaré, A.R., Schiemann, O., & Sigurdsson, S.Th. Crystal structure of a DNA containing the planar, phenoxazine-derived bi-functional spectroscopic probe (C-cedille). Nucleic Acids Res. 39, 4419-4426 (2011).[abstract]
74. Ferré-D'Amaré, A.R. Use of a coenzyme by the glmS ribozyme-riboswitch suggests primordial expansion of RNA chemistry by small molecules. Phil. Trans. R. Soc. B 366, 2942-2948 (2011). [abstract]
73. Ferré-D'Amaré, A.R. & Winkler W.C. The roles of metal ions in regulation by riboswitches. Met. Ions Life Sci. 9, 141-173 (2011). [abstract]
72. Deigan, K.E. & Ferré-D'Amaré, A.R. Riboswitches: discovery of drugs that target bacterial gene-regulatory RNAs. Acc. Chem. Res. 44, 1329-1338 (2011). [abstract]
71. Ferré-D'Amaré, A.R. Protein synthesis: stop the nonsense. Nature 474, 289-290 (2011). [abstract]
70. Zhang, J., Lau, M. & Ferré-D'Amaré, A.R. Ribozymes and riboswitches: modulation of RNA function by small molecules. Biochemistry 49, 9123-9131 (2010). [abstract]
69. Pitt, J.N. & Ferré-D'Amaré, A.R. Rapid construction of empirical RNA fitness landscapes. Science 330, 376-379 (2010). [abstract]
68. Ferré-D'Amaré, A.R. & Scott, W.G. The small self-cleaving ribozymes. Cold Spring Harbor Persp. Biol. (published online September 15, 2010). [abstract]
67. Ferré-D'Amaré, A.R. The glmS ribozyme: use of a small molecule coenzyme by a gene-regulatory RNA. Quarterly Rev. Biophys. 43, 423-447 (2010). [abstract]
66. Pitt, J.N., Rajapakse, I., & Ferré-D'Amaré, A.R. SEWAL: an open-source platform for next-generation sequence analysis and visualization. Nucleic Acids Res. 38, 7908-7915 (2010). [abstract]
65. Baird, N.J. & Ferré-D'Amaré, A.R. Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis. RNA 16, 598-609 (2010). [abstract]
64. Kulshina, N., Edwards, T.E. & Ferré-D'Amaré, A.R. Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch. RNA 16, 186-196 (2010). [abstract]
63. Ferré-D'Amaré, A.R. RNA methods: from sequence to structure and dynamics. Methods 52: 123-124 (2010). [abstract]
62. Ferré-D'Amaré, A.R. Use of the spliceosomal protein U1A to facilitate crystallization and structure determination of complex RNAs Methods 52: 159-167 (2010). [abstract]
61. Baird, N.J., Kulshina, N., & Ferré-D'Amaré, A.R. Riboswitch function: flipping the switch or tuning the dimmer? RNA Biol. 7: 328-332 (2010). [abstract]
60. Ferré-D'Amaré, A.R. An RNP switch raises a roadblock. Nature Chem. Biol. 6: 5-6 (2010). [abstract]
59. Hamma, T. & Ferré-D’Amaré, A.R. The box H/ACA ribonucleoprotein complex: interplay of RNA and protein structures in post-transcriptional RNA modification. J. Biol. Chem. 285, 805-809 (2010). [abstract]
58. Kulshina, N., Baird, N.J., & Ferré-D'Amaré, A.R. Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nature Struct. Mol. Biol. 16, 1212-1217 (2009). [abstract]
57. Klein, D.J., Edwards, T.E. & Ferré-D'Amaré, A.R. Cocrystal structure of a class-I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase. Nature Struct. Mol. Biol. 16, 343-344 (2009). [abstract]
56. Pitt, J.N. & Ferré-D'Amaré, A.R. Structure-guided engineering of the regioselectivity of RNA ligase ribozymes. J. Am. Chem. Soc. 131, 3532-3540 (2009). [abstract]
55. Mueller, E.G & Ferré-D’Amaré, A.R. Pseudouridine formation, the most common transglycosylation in RNA. In DNA and RNA Modification (ed. Grosjean, H.) Landes Bioscience, Austin pp 364-379 (2009).
54. Klein, D.J. & Ferré-D'Amaré, A.R. Crystallization of the glmS ribozyme-riboswitch. Meth. Molec. Biol. 540, 129-139 (2009). [abstract]
2006-2008
53. Xiao, H., Edwards, T.E. & Ferré-D'Amaré, A.R. Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch. Chem. Biol. 15, 1125-1137 (2008). [abstract]
52. Xiao, H., Murakami, H., Suga, H. & Ferré-D'Amaré, A.R. Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme. Nature 454, 358-361 (2008). [abstract]
51. Ferré-D’Amaré, A.R. RNA-modifying enzymes. In Protein-Nucleic Acid Interactions Structural Biology (ed. Rice, P.A. & Correll, C.C.) 367-381. Royal Society of Chemistry, Cambridge (2008).
50. Klein, D.J., Been, M.D. & Ferré-D'Amaré, A.R. Essential role of an active-site guanine in glmS ribozyme catalysis. J. Am. Chem. Soc. 129, 14858-14859 (2007). [abstract]
49. Klein, D.J., Wilkinson, S.R., Been., M.D. & Ferré-D'Amaré, A.R. Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme. J. Mol. Biol. 373, 178-189 (2007). [abstract]
48. Edwards, T.E., Klein, D.J. & Ferré-D’Amaré, A.R. Riboswitches: small molecule recognition by gene-regulatory RNAs. Curr. Op. Struct. Biol. 15, 273-279 (2007). [abstract]
47. Reichow, S.L., Hamma, T., Ferré-D’Amaré, A.R. & Varani, G. The structure and function of small nucleolar ribonucleoproteins. Nucleic Acids Res. 35, 1452-1464 (2007). [abstract]
46. Hoang, C., Chen, J., Vizthum, C.A., Kandel, J.M., Hamilton, C.S. Mueller, E.G. & Ferré-D’Amaré, A.R. Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure. Mol. Cell 24, 535-545 (2006). [abstract]
45. Klein, D.J., & Ferré-D’Amaré, A.R. Structural basis of glmS ribozyme activation by glucosamine-6-phosphate. Science 313, 1752-1756 (2006). [abstract]
44. Edwards, T.E., & Ferré-D’Amaré, A.R. Crystal structures of the thi-box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition. Structure 14, 1459-1468 (2006). [abstract]
43. Hamma, T. & Ferré-D’Amaré, A.R. Pseudouridine synthases. Chem. Biol. 13, 1125-1135 (2006). [abstract]
2003-2005
42. Hamma, T., Reichow, S.L., Varani, G., & Ferré-D’Amaré, A.R. The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nature Struct. Mol. Biol. 12, 1101-1107 (2005). [abstract]
41. Hoang, C., Hamilton, C.S., Mueller, E.G., & Ferré-D'Amaré, A.R. Precursor complex structure of pseudouridine synthase TruB suggest coupling of active site perturbations to an RNA-sequestering peripheral protein domain. Prot. Sci. 14, 2201-2206 (2005). [abstract]
40. Canizales-Quinteros, S., Aguilar-Salinas, C.A., Huertas-Vázquez, A., Ordóñez-Sánchez, M.L., Rodríguez-Torres, M., Venturas-Gallegos, J.L., Riba, L., Ramírez-Jiménez, S., Salas-Montiel, R., Medina-Palacios, G., Robles-Osorio, L., Miliar-García, A., Rosales-León, L., Ruíz-Ordaz, B.H., Zentella-Dehesa, A., Ferré-D'Amaré A., Gómez-Pérez, F.J., & Tusié-Luna M.T. novel ARH splice site mutation in a Mexican kindred with autosomal recessive hypercholesterolemia. Hum. Genet. 116, 114-120 (2005). [abstract]
39. Pitt, J.N. & Ferré-D'Amaré, A.R. How RNA closes a diel. Nature Struct. Mol. Biol. 12, 206-208 (2005). [abstract]
38. Hoang, C. & Ferré-D'Amaré, A.R. Crystal structure of the highly divergent pseudouridine synthase TruD reveals a circular permutation of a conserved fold. RNA 10, 1026-1033 (2004). [abstract]
37. Hamma, T. & Ferré-D'Amaré, A.R. Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 Å resolution. Structure 12, 893-903 (2004). [abstract]
36. Ferré-D'Amaré, A.R. The hairpin ribozyme. In Encyclopedia of Biological Chemistry (ed. Lennarz, W.J., & Lane, M.D.) Elsevier Science, New York 3, 743-746 (2004).
35. Rupert, P.B. & Ferré-D'Amaré, A.R. Crystallization of the hairpin ribozyme: illustrative protocols. Meth. Mol. Biol. 252, 303-311 (2004). [abstract]
34. Ferré-D'Amaré, A.R. The hairpin ribozyme. Biopolymers 73, 71-78 (2004). [abstract]
33. Rupert, P.B., Xiao, H., & Ferré-D'Amaré, A.R. U1A RNA binding domain at 1.8 Å resolution. Acta Crystallogr. D 59, 1521-1524 (2003). [abstract]
32. Ferré-D'Amaré, A.R. RNA-modifying enzymes. Curr. Op. Struct. Biol. 13, 49-55 (2003). [abstract]
2000-2002
31. Rupert, P.B., Massey, A., Sigurdsson, S.Th. & Ferré-D'Amaré, A.R. Transition state stabilization by a catalytic RNA. Science 298, 1421-1424 (2002). [abstract]
30. Ferré-D'Amaré, A.R. & Rupert, P.B. The hairpin ribozyme: from crystal structure to function. Trans. Biochem. Soc. 30, 1105-1109 (2002). [abstract]
29. Hoang, C. & Ferré-D'Amaré, A.R. Cocrystal structure of a tRNA Ψ55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme. Cell 107, 929-939 (2001). [abstract]
28. Rupert, P.B. & Ferré-D’Amaré, A.R. Crystal structure of a hairpin ribozyme- inhibitor complex with implications for catalysis. Nature 410, 780-786 (2001). [abstract]
27. Lupták, A., Ferré-D’Amaré, A.R., Zhou, K., Zilm, K.W. & Doudna, J.A. Direct pKa measurement of the active site cytosine in a genomic HDV ribozyme. J. Am. Chem. Soc. 123, 8447-8452 (2001). [abstract]
26. Ferré-D'Amaré, A.R. & Doudna, J.A. Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein as U1A as a crystallization module. J. Mol. Biol. 295, 541-556 (2000). [abstract]
25. Rupert, P.B. & Ferré-D’Amaré, A.R. SRPrises in RNA–protein recognition. Structure 8, 99-104 (2000). [abstract]
24. Ferré-D'Amaré, A.R. & Doudna, J.A. Methods to crystallize RNA. In Curent Protocols in Nucleic Acid Chemistry (ed Beaucage, S.L., Bergstrom, D.E., Glick, G.D., & Jones, R.A.) 7.6.1-7.6.10, Wiley, New York (2000). [abstract]
A.R. Ferré-D'Amaré publications 1985-1999
23. Wadkins, T.S., Perrotta, A.T., Ferré-D’Amaré, A.R., Doudna, J.A. & Been, M.D. A nested double-pseudoknot is required for self-cleavage activity of both the genomic and antigenomic HDV ribozymes. RNA 5, 720-727 (1999). [abstract]
22. Ferré-D’Amaré, A.R. Crystallization of biological macromolecules. RNA 5, 847-848 (1999).
21. Ferré-D'Amaré, A.R. & Doudna, J.A. RNA folds: insights from recent crystal structures. Annu. Rev. Biophys. Biomolec. Struct. 28, 57-73 (1999). [abstract]
20. Ferré-D'Amaré, A.R., Zhou, K. & Doudna, J.A. Crystal structure of a hepatitis delta virus ribozyme. Nature 395, 567-574 (1998). [abstract]
19. Basu, S., Rambo, R.P., Strauss-Soukup, J., Cate, J.H., Ferré-D'Amaré, A.R., Strobel, S.A. & Doudna, J.A. A specific monovalent metal ion integral to the A-A platform of the RNA tetraloop receptor. Nature Struct. Biol. 5, 986-992 (1998). [abstract]
18. Ferré-D'Amaré, A.R., Zhou, K. & Doudna, J.A. A general module for RNA crystallization. J. Mol. Biol. 279, 621-631 (1998). [abstract]
17. Párraga, A., Bellsolell, L., Ferré-D'Amaré, A.R. & Burley, S.K. Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 Å resolution. Structure 6, 661-672 (1998).
16. Steingrímsson, E., Favor, J., Ferré-D'Amaré, A.R., Copeland, N.G. & Jenkins, N.A. Mitfmi-enu122 is a missense mutation in the HLH dimerization domain. Mammalian Genome 9, 250-252 (1998). [abstract]
15. Ferré-D'Amaré, A.R. & Burley, S.K. Dynamic light scattering in evaluating crystallizability of macromolecules. Meth. Enzymol. 276, 157-166 (1997).
14. Ferré-D'Amaré, A.R. & Doudna, J.A. Establishing suitability of RNA preparations for crystallization. Determination of polydispersity. In Ribozyme Protocols (ed. Turner, P.C.) 371-378, Humana Press, Totowa, N.J. (1997). [abstract]
13. Ferré-D'Amaré, A.R. & Doudna, J.A. Use of cis- and trans-ribozymes to remove 5' and 3' heterogeneities from milligrams of in vitro transcribed RNA. Nucleic Acids Res. 24, 977-978 (1996). [abstract]
12. Steingímsson, E., Nii, A., Fisher, D.F., Ferré-D'Amaré, A.R., McCormick, R.J., Russell, L.B., Burley, S.K., Ward, J.M., Jenkins, N.A. & Copeland, N.G. The semidominant Mib mutation identifies a role for the HLH domain in DNA binding in addition to its role in protein dimerization. EMBO J. 15, 6280-6289 (1996).
11. Canne, L.E., Ferré-D'Amaré, A.R., Burley, S.K. & Kent, S.B.H. Total chemical synthesis of a unique transcription factor protein: cMyc-Max. J. Am. Chem. Soc. 117, 2998-3007 (1995).
10. Ferré-D'Amaré, A.R. Prospección ecológica de los arrecifes coralinos de Cayos Arcas y Triángulos, Campeche, México. Impacto ambiental de una década de actividades de la industria petrolera. Sian Ka'an Serie Documentos 4, 40-48 (1995).
9. Sha, M., Ferré-D'Amaré, A.R., Burley, S.K. & Goss, D.J. Anti-cooperative biphasic equilibrium binding of transcription factor upstream stimulatory factor to its cognate DNA monitored by protein fluorescence changes. J. Biol. Chem. 270, 19325-19329 (1995). [abstract]
8. Ferré-D'Amaré, A.R. & Burley, S.K. DNA recognition by helix-loop-helix proteins. In Nucleic Acids and Molecular Biology (ed Eckstein, F. & Lilley, D.M.J.) 9, 285-298, Springer Verlag, Berlin (1995).
7. Cohen, S.L., Ferré-D'Amaré, A.R., Burley, S.K. & Chait, B.T. Probing the solution structure of the DNA-binding protein Max by a combination of proteolysis and mass spectrometry. Protein Sci. 4, 1088-1099 (1995). [abstract]
6. Ferré-D'Amaré, A.R., Pognonec, P., Roeder, R.G. & Burley, S.K. Structure and function of the b/HLH/Z domain of USF. EMBO J. 13, 180-189 (1994). [abstract]
5. Ferré-D'Amaré, A.R. & Burley, S.K. Use of dynamic light scattering to assess crystallizability of macromolecules and macromolecular assemblies. Structure 2, 357-359, 567 (1994). [abstract]
4. Steingrímsson, E., Moore, K.J., Lamoreux, M.L., Ferré-D'Amaré, A.R., Burley, S.K., Sanders Zimring, D.C., Skow, L.C., Hodgkinson, C.A., Arnheiter, H., Copeland, N.G. & Jenkins, N.A. Molecular basis of mouse microphthalmia (mi) mutations helps explain their developmental and phenotypic consequences. Nature Genet. 8, 256-268 (1994). [abstract]
3. Ferré-D'Amaré, A.R., Prendergast, G.C., Ziff, E.B. & Burley, S.K. Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature 363, 38- 45 (1993). [abstract]
2. Burley, S.K., Clark, K.L., Ferré-D'Amaré, A., Kim, J.L. & Nikolov, D.B. X-ray crystallographic studies of eukaryotic transcription factors. Cold Spring Harbor Symp. Quant. Biol. 58, 123-132 (1993). [abstract]
1. Ferré-D'Amaré, A.R. Coral reefs of the Mexican Atlantic: a review. Proc. Fifth Intl. Coral Reef Congress 6, 349-354 (1985). |
