Software Details
Software will be acquired, depending on the user needs. Here is the list of available software:
- Portland group compilers are in /opt/pgi/. You can setup the Portland
group compiler by executing the following command (substitute setups.csh for csh/tcsh):
source /opt/pgi/setup.sh
- Intel compilers are in /opt/intel/. You can setup the Intel
compilers by executing the following command (substitute setups.csh for csh/tcsh):
source /opt/intel/intelc.sh intel64
source /opt/intel/intelf.sh intel64
Note: The code generated with the Intel compiler option -fast
is not a valid executable for AMD processors. Please use the following options instead to compile your code on fulla:
-O3 -ipo -no-prec-div -static -xW
The MPICH2 versions for gcc, PGI, and Intel are installed in the directories /usr/local/mpich2-gcc,
/usr/local/mpich2-pgi, and /usr/local/mpich2-intel, respectively. To use mpich2-pgi or mpich2-intel,
you will have to first setup the respective compiler as
mentioned above. To launch the MPI jobs use /usr/local/mpich2-xxx/bin/mpiexec.
Execute the above mpiexec commands with the
option --help to obtain a list of the available options with the mpiexec command.
OpenMPI for PGI is in /usr/local/openmpi-pgi, for Intel in /usr/local/openmpi-intel, and for gcc in
/usr/local/openmpi-gcc. For PGI and Intel you will need to setup the respective compiler environment
variables as discussed above.
Globus Toolkit (GT) is located in /usr/local/gt5.0.3.
Launching MPI Jobs
For mpich2, please use mpiexec command found in
/usr/local/mpich2-xxx/bin to launch your MPI jobs.
mpiexec will automatically determine the hosts
and the number of processes from your batch job submission. You may
optionally specify the number of processes with command line option "-n #'.
For openmpi, use the mpirun
command in /usr/local/openmpi-xxx/bin. Set the following environment variable:
and for PGI or Intel setup the compiler environment as discussed above.
Use the mpirun command in the bin directory. You should not specify
a hostfile or a machinefile, as the hosts will be automatically detected
from the batch scheduler.
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